SRX3427398
GSM2867771: input NP 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Nephron progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
nephron progenitor cells
strain
CFW
developing stage
E16.5
antibody
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Qiagen MinElute PCR Purification kit (#28004) Rubicon ThruPlex genomic DNA library kit (#R400429)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37691306
Reads aligned (%)
93.6
Duplicates removed (%)
18.4
Number of peaks
8229 (qval < 1E-05)

mm9

Number of total reads
37691306
Reads aligned (%)
93.4
Duplicates removed (%)
18.4
Number of peaks
8246 (qval < 1E-05)

Base call quality data from DBCLS SRA