Antigen

Antigen Class

TFs and others

Antigen

SMARCA4

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2

antibody

ab110641

supplier

Abcam

lot

GR1580844-27

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed in 0.3% formaldehyde for 30 minutes at 4 degrees prior to processing for ChIP using protocol from Raab et al 2015. Kapa DNA hyperpep kit

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

22511470

Reads aligned (%)

91.8

Duplicates removed (%)

0.7

Number of peaks

226 (qval < 1E-05)

hg19

Number of total reads

22511470

Reads aligned (%)

91.0

Duplicates removed (%)

0.6

Number of peaks

260 (qval < 1E-05)