SRX342325
Digital Genomic Footprinting assay of Fibroblasts, Fetal Skin, Back

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
Fetal skin
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Cell Culture
CELL_TYPE
Fibroblasts, Fetal Skin, Back
MARKERS
NA
CULTURE_CONDITIONS
None
DONOR_ID
H-24218
DONOR_AGE
day 96
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
short term
sample_term_id
CL_0002620

Sequenced DNA Library

library_name
DGF.DS19174
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
434940724
Reads aligned (%)
84.8
Duplicates removed (%)
59.2
Number of peaks
246719 (qval < 1E-05)

hg19

Number of total reads
434940724
Reads aligned (%)
84.3
Duplicates removed (%)
60.1
Number of peaks
245982 (qval < 1E-05)

Base call quality data from DBCLS SRA