Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Kidney
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24584
DONOR_AGE
day 113
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002113

Sequenced DNA Library

library_name
DS20988
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
45862249
Reads aligned (%)
91.6
Duplicates removed (%)
9.3
Number of peaks
61481 (qval < 1E-05)

hg19

Number of total reads
45862249
Reads aligned (%)
91.2
Duplicates removed (%)
10.2
Number of peaks
61320 (qval < 1E-05)

Base call quality data from DBCLS SRA