SRX342322
Chromatin accessibility assay of Fetal Kidney

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Kidney
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23724
DONOR_AGE
day 87
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002113

Sequenced DNA Library

library_name
DS17068
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28984289
Reads aligned (%)
97.4
Duplicates removed (%)
4.7
Number of peaks
24886 (qval < 1E-05)

hg19

Number of total reads
28984289
Reads aligned (%)
96.8
Duplicates removed (%)
5.6
Number of peaks
25492 (qval < 1E-05)

Base call quality data from DBCLS SRA