SRX342317
Histone H3K4me1 ChIP-Seq of CD8 Primary Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD8+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD8 Primary Cells
MARKERS
CD8+
DONOR_ID
RO 01701
DONOR_AGE
year 37
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000625

Sequenced DNA Library

library_name
Histone.DS23313
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31647074
Reads aligned (%)
86.2
Duplicates removed (%)
7.1
Number of peaks
59862 (qval < 1E-05)

hg19

Number of total reads
31647074
Reads aligned (%)
85.9
Duplicates removed (%)
7.2
Number of peaks
59671 (qval < 1E-05)

Base call quality data from DBCLS SRA