Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD4 Primary Cells
MARKERS
CD4+
DONOR_ID
RO 01679
DONOR_AGE
year 21
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000492

Sequenced DNA Library

library_name
Histone.DS23723
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24383668
Reads aligned (%)
66.9
Duplicates removed (%)
5.9
Number of peaks
181 (qval < 1E-05)

hg19

Number of total reads
24383668
Reads aligned (%)
66.6
Duplicates removed (%)
6.5
Number of peaks
208 (qval < 1E-05)

Base call quality data from DBCLS SRA