Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD8+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD8 Primary Cells
MARKERS
CD8+
DONOR_ID
RO 01701
DONOR_AGE
year 37
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000625

Sequenced DNA Library

library_name
Histone.DS22909
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
37170353
Reads aligned (%)
33.8
Duplicates removed (%)
10.5
Number of peaks
395 (qval < 1E-05)

hg19

Number of total reads
37170353
Reads aligned (%)
33.5
Duplicates removed (%)
11.3
Number of peaks
389 (qval < 1E-05)

Base call quality data from DBCLS SRA