Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Cardiovascular

Cell type

Circle of Willis

MeSH Description

A polygonal anastomosis at the base of the brain formed by the internal carotid (CAROTID ARTERY, INTERNAL), proximal parts of the anterior, middle, and posterior cerebral arteries (ANTERIOR CEREBRAL ARTERY; MIDDLE CEREBRAL ARTERY; POSTERIOR CEREBRAL ARTERY), the anterior communicating artery and the posterior communicating arteries.

Sample

source_name

Circle of Willis blood vessel

tissue

Circle of Willis

sample id

CoW2

gender

female

age

60

Cause of death

Euthanasia (metastasized non-small cell lung carcinoma)

postmortem delay

8:25 hours

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Frozen in liquid nitrogen, Crosslinked, Lysed and Immunoprecipitated. Illumina TruSeq DNA library protocol.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

27732348

Reads aligned (%)

99.0

Duplicates removed (%)

2.9

Number of peaks

811 (qval < 1E-05)

hg19

Number of total reads

27732348

Reads aligned (%)

98.0

Duplicates removed (%)

4.4

Number of peaks

1010 (qval < 1E-05)