Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Cardiovascular

Cell type

Circle of Willis

MeSH Description

A polygonal anastomosis at the base of the brain formed by the internal carotid (CAROTID ARTERY, INTERNAL), proximal parts of the anterior, middle, and posterior cerebral arteries (ANTERIOR CEREBRAL ARTERY; MIDDLE CEREBRAL ARTERY; POSTERIOR CEREBRAL ARTERY), the anterior communicating artery and the posterior communicating arteries.

Sample

source_name

Circle of Willis blood vessel

tissue

Circle of Willis

sample id

CoW1

gender

female

age

54

Cause of death

Acute renal failure

postmortem delay

8:00 hours

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Frozen in liquid nitrogen, Crosslinked, Lysed and Immunoprecipitated. Illumina TruSeq DNA library protocol.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

21824129

Reads aligned (%)

98.9

Duplicates removed (%)

2.7

Number of peaks

705 (qval < 1E-05)

hg19

Number of total reads

21824129

Reads aligned (%)

97.9

Duplicates removed (%)

4.0

Number of peaks

955 (qval < 1E-05)