Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Cardiovascular
Cell type
Circle of Willis
MeSH Description
A polygonal anastomosis at the base of the brain formed by the internal carotid (CAROTID ARTERY, INTERNAL), proximal parts of the anterior, middle, and posterior cerebral arteries (ANTERIOR CEREBRAL ARTERY; MIDDLE CEREBRAL ARTERY; POSTERIOR CEREBRAL ARTERY), the anterior communicating artery and the posterior communicating arteries.

Attributes by original data submitter

Sample

source_name
Circle of Willis blood vessel
tissue
Circle of Willis
sample id
CoW3
gender
female
age
90
Cause of death
Unknown
postmortem delay
5:50 hours
chip antibody
H3K4me1 (Abcam, ab8895)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Frozen in liquid nitrogen, Crosslinked, Lysed and Immunoprecipitated. Illumina TruSeq DNA library protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24613555
Reads aligned (%)
94.2
Duplicates removed (%)
5.1
Number of peaks
945 (qval < 1E-05)

hg19

Number of total reads
24613555
Reads aligned (%)
93.6
Duplicates removed (%)
5.8
Number of peaks
957 (qval < 1E-05)

Base call quality data from DBCLS SRA