Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A
cell line
MCF10A
cell type
Mammary gland fibrocystic disease epithelial cells
cell source
ATCC #CRL-10317
modifications
Parental cells
chip antibody
Homemade (ref. Morey et al., Cell Stem Cell, 2015)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were grown to 80% confluence on 150cm plates and processed using the High Sensitivity ChIP-IT Kit (Active Motif cat #53040). Immunoprecipitated DNA was used to generate libraries using the NEBNext Ultra DNA Library Prep Kit for Illumina (New England Biolabs cat# 7370) following the manufacturer's instructions.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
68858350
Reads aligned (%)
98.0
Duplicates removed (%)
14.9
Number of peaks
8878 (qval < 1E-05)

hg19

Number of total reads
68858350
Reads aligned (%)
97.6
Duplicates removed (%)
15.9
Number of peaks
9066 (qval < 1E-05)

Base call quality data from DBCLS SRA