Curated Sample Data


Genome
mm9
Antigen Class
Unclassified
Antigen
Unclassified
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Cell culture passage 3
tissue
haematopoeitic progenitor cell line (HPC7)
genotype
Wild type

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. The library was completed and amplified through a PCR following the DeepSeq using the NEBNext® Ultra™ DNA Library Prep Kit for Illumina default instructions (NEB #E7645). ChIP libraries were sequenced using an Illumina HiSeq 3000.

Platform Information


instrument_model
Illumina HiSeq 3000

External Database Query

Logs in read processing pipeline


Number of total reads
25229729
Reads aligned (%)
78.7
Duplicates removed (%)
57.2
Number of peaks
1102 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA