Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA2

Cell type

Cell type Class
Digestive tract
Cell type
SW 620
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

source_name
SW620 cell line
chip antibody
FOXA2 (Proteintech Cat. No. 22474-1-AP)
tumor stage
Dukes' type C, colorectal adenocarcinoma
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-sequencing libraries were prepared by using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB Cat. No. E7370), according to the manufacturer's instructions. The sequencing was performed by Hiseq1500 (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 1500

hg19

Number of total reads
21865786
Reads aligned (%)
86.3
Duplicates removed (%)
6.6
Number of peaks
6136 (qval < 1E-05)

hg38

Number of total reads
21865786
Reads aligned (%)
88.6
Duplicates removed (%)
5.0
Number of peaks
6372 (qval < 1E-05)

Base call quality data from DBCLS SRA