Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: SW 480
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3394266
GSM2857641: SW480 Input; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
SW 480
Primary Tissue
unresolved
Tissue Diagnosis
unresolved
Attributes by original data submitter
Sample
source_name
SW480 cell line
chip antibody
Input
tumor stage
Dukes' type B, colorectal adenocarcinoma
treatment
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-sequencing libraries were prepared by using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB Cat. No. E7370), according to the manufacturer's instructions. The sequencing was performed by Hiseq1500 (Illumina).
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24425575
Reads aligned (%)
96.9
Duplicates removed (%)
4.1
Number of peaks
844 (qval < 1E-05)
hg19
Number of total reads
24425575
Reads aligned (%)
96.0
Duplicates removed (%)
5.8
Number of peaks
1064 (qval < 1E-05)
Base call quality data from
DBCLS SRA