SRX338797
Genome wide localization of RNA Polymerase II (PolII) in human Burkitt's lymphoma line Raji

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

cell_line
Raji
tissue
Burkitt's lymphoma
sequencing_protocol
ChIP-Seq
replicate
1

Sequenced DNA Library

library_name
human_Raji_PolII
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25452405
Reads aligned (%)
81.8
Duplicates removed (%)
25.1
Number of peaks
16449 (qval < 1E-05)

hg19

Number of total reads
25452405
Reads aligned (%)
81.4
Duplicates removed (%)
25.3
Number of peaks
17072 (qval < 1E-05)

Base call quality data from DBCLS SRA