SRX3387836
GSM2855486: D3 H3K4me3 IP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+

Attributes by original data submitter

Sample

source_name
CD19 B cells
cell type
CD19 B cells
ID
Donor 3
antibody
H3K4me3, ab8580 (Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared using Kapa Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48130132
Reads aligned (%)
95.9
Duplicates removed (%)
59.8
Number of peaks
18934 (qval < 1E-05)

hg19

Number of total reads
48130132
Reads aligned (%)
95.3
Duplicates removed (%)
60.1
Number of peaks
18571 (qval < 1E-05)

Base call quality data from DBCLS SRA