Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
brain
tissue
brain
age
13 month old
treatment
DMSO
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissues were homogenize and crosslinked, 10 m~1mg lysis buffer. Samples were sonicated for 40 min. ChIP libraries were constructed using Illumina standard protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
32047849
Reads aligned (%)
88.8
Duplicates removed (%)
27.7
Number of peaks
174 (qval < 1E-05)

mm9

Number of total reads
32047849
Reads aligned (%)
88.7
Duplicates removed (%)
27.6
Number of peaks
142 (qval < 1E-05)

Base call quality data from DBCLS SRA