SRX3367072
GSM2842767: TE5 Input ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
TE-5
Primary Tissue
Esophagus
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
TE5
cell line
TE5
cell type
Esophageal squamous carcinoma cells
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41301945
Reads aligned (%)
89.8
Duplicates removed (%)
10.3
Number of peaks
1056 (qval < 1E-05)

hg19

Number of total reads
41301945
Reads aligned (%)
89.1
Duplicates removed (%)
11.7
Number of peaks
1134 (qval < 1E-05)

Base call quality data from DBCLS SRA