Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
Uterus
MeSH Description
The hollow thick-walled muscular organ in the female PELVIS. It consists of the fundus (the body) which is the site of EMBRYO IMPLANTATION and FETAL DEVELOPMENT. Beyond the isthmus at the perineal end of fundus, is CERVIX UTERI (the neck) opening into VAGINA. Beyond the isthmi at the upper abdominal end of fundus, are the FALLOPIAN TUBES.

Attributes by original data submitter

Sample

source_name
Mouse uterus
tissue
Uterus
strain
C57BL/6
age
8 week old
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP and library construction was performed as described in Reddy et al, Genome Research, 2009

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
30318781
Reads aligned (%)
96.3
Duplicates removed (%)
8.7
Number of peaks
440 (qval < 1E-05)

mm9

Number of total reads
30318781
Reads aligned (%)
96.1
Duplicates removed (%)
8.8
Number of peaks
468 (qval < 1E-05)

Base call quality data from DBCLS SRA