Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Mouse liver
tissue
Liver
strain
C57BL/6
age
8 week old
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP and library construction was performed as described in Reddy et al, Genome Research, 2009

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
26156327
Reads aligned (%)
96.8
Duplicates removed (%)
8.6
Number of peaks
418 (qval < 1E-05)

mm9

Number of total reads
26156327
Reads aligned (%)
96.7
Duplicates removed (%)
8.7
Number of peaks
430 (qval < 1E-05)

Base call quality data from DBCLS SRA