Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Input DNA
strain
C57BL/6
tissue
Spleens and lymph nodes
cell type
CD8+ T cells
stimulated with
anti-CD3, anti-CD28 and recombinant hIL-2
time
72 hours

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Live cells were isolated by Histopaque gradient centrifugation. Cross-linking was done by addition of 1% paraformaldehyde at room temperature for 10 min, followed by sonication and immunoprecipitation with 10 μg of anti-IRF4 (clone sc-6059) and a corresponding goat polyclonal-IgG control (clone sc-2028) (Santa Cruz Technologies). The DNA fragments were blunt-end ligated to the Illumina adaptors, amplified, and sequenced with an Illumina HiSeq 2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
25820698
Reads aligned (%)
97.9
Duplicates removed (%)
11.8
Number of peaks
484 (qval < 1E-05)

mm9

Number of total reads
25820698
Reads aligned (%)
97.7
Duplicates removed (%)
11.8
Number of peaks
527 (qval < 1E-05)

Base call quality data from DBCLS SRA