Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cell line
chip antibody
POL11
cell line
HL-60
treatment
PMA treated (16h)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
24310621
Reads aligned (%)
94.2
Duplicates removed (%)
6.3
Number of peaks
15482 (qval < 1E-05)

hg19

Number of total reads
24310621
Reads aligned (%)
93.4
Duplicates removed (%)
7.1
Number of peaks
15462 (qval < 1E-05)

Base call quality data from DBCLS SRA