SRX3345957
GSM2836496: HL-60 INTS13 shEGR1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS13

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cell line
chip antibody
INTS13
cell line
HL-60
treatment
PMA treated (16h)
infection
shRNA against EGR1 (EGR1-KD)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
56290552
Reads aligned (%)
51.9
Duplicates removed (%)
9.7
Number of peaks
8210 (qval < 1E-05)

hg19

Number of total reads
56290552
Reads aligned (%)
51.4
Duplicates removed (%)
11.9
Number of peaks
8146 (qval < 1E-05)

Base call quality data from DBCLS SRA