SRX3345948
GSM2836487: HL-60 H3K27Ac PMA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cell line
chip antibody
H3K27Ac
cell line
HL-60
treatment
PMA treated (16h)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36877651
Reads aligned (%)
98.2
Duplicates removed (%)
30.0
Number of peaks
35398 (qval < 1E-05)

hg19

Number of total reads
36877651
Reads aligned (%)
97.8
Duplicates removed (%)
30.5
Number of peaks
35391 (qval < 1E-05)

Base call quality data from DBCLS SRA