Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EGR1

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cell line
chip antibody
EGR1
cell line
HL-60
treatment
PMA treated (16h)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
49090271
Reads aligned (%)
81.9
Duplicates removed (%)
12.3
Number of peaks
10206 (qval < 1E-05)

hg38

Number of total reads
49090271
Reads aligned (%)
84.8
Duplicates removed (%)
10.1
Number of peaks
10738 (qval < 1E-05)

Base call quality data from DBCLS SRA