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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: CD8+ T cells
ATCC
MeSH
RIKEN BRC
SRX3337490
GSM2833293: input DNA, Day3, wild-type; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
wild-type
cell type
CD8+ T cells
background strain
C57BL/6
genotype
wild-type
chip antibody
none (input)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Formaldehyde-cross-linked chromatin was isolated from wild-type and Suv39h1-KO in vitro differentiated CD8+ T cells. 100-bp paired-end reads sequencing was performed on Illumina HiSeq2500
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
55147969
Reads aligned (%)
99.0
Duplicates removed (%)
14.5
Number of peaks
450 (qval < 1E-05)
mm9
Number of total reads
55147969
Reads aligned (%)
98.9
Duplicates removed (%)
14.7
Number of peaks
409 (qval < 1E-05)
Base call quality data from
DBCLS SRA