Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
wild-type
cell type
CD8+ T Cells
strain
C57BL/6
chip antibody
none (input)
day
0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Native ChIP was performed for 4 millions of cells, resuspended in MNAse digestion buffer. Sequencing was performed on Illumina HiSeq2500 sequencer at around 100 millions of paired-end reads per sample (150 bases as read length).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
50429333
Reads aligned (%)
99.0
Duplicates removed (%)
6.4
Number of peaks
191 (qval < 1E-05)

mm9

Number of total reads
50429333
Reads aligned (%)
98.9
Duplicates removed (%)
6.4
Number of peaks
177 (qval < 1E-05)

Base call quality data from DBCLS SRA