Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
p300 ChIP-seq from Senescent Fibroblasts
cell line
IMR90
cell type
Lung Fibroblasts
population doubling
PD78
senescence induction
Replicative Senescence
target
p300
chip antibody
Santa Cruz Biotechnology sc-585X, RRID: AB_2616339

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
41318037
Reads aligned (%)
59.4
Duplicates removed (%)
32.4
Number of peaks
1608 (qval < 1E-05)

hg38

Number of total reads
41318037
Reads aligned (%)
61.1
Duplicates removed (%)
31.3
Number of peaks
1943 (qval < 1E-05)

Base call quality data from DBCLS SRA