Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID3A

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

sex
female
cell line
GM12878
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
unknown
age
unknown
donor ID
ENCDO000AAK
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
39032246
Reads aligned (%)
70.5
Duplicates removed (%)
31.3
Number of peaks
2973 (qval < 1E-05)

hg19

Number of total reads
39032246
Reads aligned (%)
70.0
Duplicates removed (%)
31.5
Number of peaks
2848 (qval < 1E-05)

Base call quality data from DBCLS SRA