Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LCORL

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

dev stage
child
cell line
HepG2
sex
male
sample type
immortalized cell line
donor ID
ENCDO000AAC
age
15 year
health state
hepatocellular carcinoma
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
33772672
Reads aligned (%)
97.3
Duplicates removed (%)
1.6
Number of peaks
3768 (qval < 1E-05)

hg19

Number of total reads
33772672
Reads aligned (%)
96.0
Duplicates removed (%)
1.7
Number of peaks
2977 (qval < 1E-05)

Base call quality data from DBCLS SRA