Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adipocyte
Cell type
Colon, Transverse
MeSH Description
The segment of LARGE INTESTINE between ASCENDING COLON and DESCENDING COLON. It passes from the RIGHT COLIC FLEXURE across the ABDOMEN, then turns sharply at the left colonic flexure into the descending colon.

Attributes by original data submitter

Sample

sex
male
tissue
transverse colon
lab
Richard Myers, HAIB
sample_type
tissue
age
37 year
donor ID
ENCDO845WKR
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
40467274
Reads aligned (%)
89.2
Duplicates removed (%)
3.2
Number of peaks
50606 (qval < 1E-05)

hg19

Number of total reads
40467274
Reads aligned (%)
88.8
Duplicates removed (%)
3.2
Number of peaks
50422 (qval < 1E-05)

Base call quality data from DBCLS SRA