Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBFOX2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sex
female
cell line
K562
lab
Xiang-Dong Fu, UCSD
sample_type
immortalized cell line
health state
chronic myelogenous leukemia (CML)
age
53 year
donor ID
ENCDO000AAD
dev_stage
adult

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
39196626
Reads aligned (%)
85.8
Duplicates removed (%)
40.7
Number of peaks
25056 (qval < 1E-05)

hg19

Number of total reads
39196626
Reads aligned (%)
85.2
Duplicates removed (%)
40.7
Number of peaks
24932 (qval < 1E-05)

Base call quality data from DBCLS SRA