SRX3322739
GSM2828514: ChIP-seq from VCaP (ENCLB968FVP); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sex
male
cell line
VCaP
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
prostate adenocarcinoma
age
50 year
donor ID
ENCDO000ACX
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46354093
Reads aligned (%)
98.0
Duplicates removed (%)
1.5
Number of peaks
1214 (qval < 1E-05)

hg19

Number of total reads
46354093
Reads aligned (%)
97.0
Duplicates removed (%)
1.8
Number of peaks
449 (qval < 1E-05)

Base call quality data from DBCLS SRA