SRX3322735
GSM2828506: ChIP-seq from K562 (ENCLB262NKS); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sex
female
cell line
K562
lab
Kevin White, UChicago
passage number
4
sample_type
immortalized cell line
health state
chronic myelogenous leukemia (CML)
age
53 year
donor ID
ENCDO000AAD
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48519781
Reads aligned (%)
97.3
Duplicates removed (%)
14.3
Number of peaks
3217 (qval < 1E-05)

hg19

Number of total reads
48519781
Reads aligned (%)
96.8
Duplicates removed (%)
15.2
Number of peaks
1238 (qval < 1E-05)

Base call quality data from DBCLS SRA