Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Gastroesophageal sphincter
NA
NA

Attributes by original data submitter

Sample

sex
male
tissue
gastroesophageal sphincter
lab
Michael Snyder, Stanford
sample_type
tissue
age
54 year
donor ID
ENCDO451RUA
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
40666492
Reads aligned (%)
93.2
Duplicates removed (%)
23.6
Number of peaks
26469 (qval < 1E-05)

hg19

Number of total reads
40666492
Reads aligned (%)
92.2
Duplicates removed (%)
24.0
Number of peaks
25879 (qval < 1E-05)

Base call quality data from DBCLS SRA