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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Breast epithelium
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3322199
GSM2827133: ChIP-seq from breast epithelium (ENCLB596FXQ); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Breast
Cell type
Breast epithelium
NA
NA
Attributes by original data submitter
Sample
sex
female
tissue
breast epithelium
lab
Michael Snyder, Stanford
sample_type
tissue
age
51 year
donor ID
ENCDO271OUW
dev_stage
adult
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
49014189
Reads aligned (%)
59.2
Duplicates removed (%)
43.8
Number of peaks
7863 (qval < 1E-05)
hg19
Number of total reads
49014189
Reads aligned (%)
58.6
Duplicates removed (%)
44.2
Number of peaks
7325 (qval < 1E-05)
Base call quality data from
DBCLS SRA