SRX3322149
GSM2825556: ChIP-seq from HepG2 (ENCLB802CQC); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TBX3

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

dev stage
child
cell line
HepG2
sex
male
sample type
immortalized cell line
donor ID
ENCDO000AAC
age
15 year
health state
hepatocellular carcinoma
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48368971
Reads aligned (%)
97.2
Duplicates removed (%)
5.3
Number of peaks
3330 (qval < 1E-05)

hg19

Number of total reads
48368971
Reads aligned (%)
96.0
Duplicates removed (%)
5.5
Number of peaks
2094 (qval < 1E-05)

Base call quality data from DBCLS SRA