SRX3322143
GSM2825674: ChIP-seq from VCaP (ENCLB697NZR); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sex
male
cell line
VCaP
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
prostate adenocarcinoma
age
50 year
donor ID
ENCDO000ACX
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37235861
Reads aligned (%)
98.2
Duplicates removed (%)
17.2
Number of peaks
36484 (qval < 1E-05)

hg19

Number of total reads
37235861
Reads aligned (%)
97.1
Duplicates removed (%)
17.4
Number of peaks
35688 (qval < 1E-05)

Base call quality data from DBCLS SRA