SRX3322085
GSM2825554: ChIP-seq from gastroesophageal sphincter (ENCLB799RLX); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Gastroesophageal sphincter
NA
NA

Attributes by original data submitter

Sample

sex
male
tissue
gastroesophageal sphincter
lab
Michael Snyder, Stanford
sample_type
tissue
age
37 year
donor ID
ENCDO845WKR
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49027415
Reads aligned (%)
93.4
Duplicates removed (%)
28.4
Number of peaks
29886 (qval < 1E-05)

hg19

Number of total reads
49027415
Reads aligned (%)
92.6
Duplicates removed (%)
28.8
Number of peaks
28925 (qval < 1E-05)

Base call quality data from DBCLS SRA