Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

dev stage
adult
cell line
GM12878
sex
female
sample type
immortalized cell line
donor ID
ENCDO000AAK
age
unknown
health state
unknown
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
27725454
Reads aligned (%)
98.7
Duplicates removed (%)
15.7
Number of peaks
1045 (qval < 1E-05)

hg19

Number of total reads
27725454
Reads aligned (%)
98.0
Duplicates removed (%)
16.5
Number of peaks
1080 (qval < 1E-05)

Base call quality data from DBCLS SRA