SRX3322004
GSM2824357: ChIP-seq from MCF-7 (ENCLB844GWF); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNIP1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
adult
cell line
MCF-7
sex
female
sample type
immortalized cell line
donor ID
ENCDO000AAE
age
69 year
health state
breast cancer (adenocarcinoma)
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46700227
Reads aligned (%)
87.5
Duplicates removed (%)
15.3
Number of peaks
2016 (qval < 1E-05)

hg19

Number of total reads
46700227
Reads aligned (%)
86.5
Duplicates removed (%)
15.6
Number of peaks
994 (qval < 1E-05)

Base call quality data from DBCLS SRA