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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NBN
wikigenes
PDBj
CellType: Hep G2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3321965
GSM2825454: ChIP-seq from HepG2 (ENCLB761EDW); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NBN
Cell type
Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
dev stage
child
donor ID
ENCDO000AAC
age
15 year
sex
male
lab
Michael Snyder, Stanford
health state
hepatocellular carcinoma
sample type
immortalized cell line
cell line
HepG2
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47171256
Reads aligned (%)
97.2
Duplicates removed (%)
1.2
Number of peaks
2368 (qval < 1E-05)
hg19
Number of total reads
47171256
Reads aligned (%)
95.9
Duplicates removed (%)
1.3
Number of peaks
1256 (qval < 1E-05)
Base call quality data from
DBCLS SRA