Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF21A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sex
female
cell line
K562
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
chronic myelogenous leukemia (CML)
age
53 year
donor ID
ENCDO000AAD
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24991927
Reads aligned (%)
97.7
Duplicates removed (%)
4.7
Number of peaks
2134 (qval < 1E-05)

hg19

Number of total reads
24991927
Reads aligned (%)
96.8
Duplicates removed (%)
5.1
Number of peaks
1010 (qval < 1E-05)

Base call quality data from DBCLS SRA