Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adipocyte
Cell type
Colon, Transverse
MeSH Description
The segment of LARGE INTESTINE between ASCENDING COLON and DESCENDING COLON. It passes from the RIGHT COLIC FLEXURE across the ABDOMEN, then turns sharply at the left colonic flexure into the descending colon.

Attributes by original data submitter

Sample

sex
female
tissue
transverse colon
lab
Michael Snyder, Stanford
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
21713121
Reads aligned (%)
87.3
Duplicates removed (%)
2.6
Number of peaks
4152 (qval < 1E-05)

hg19

Number of total reads
21713121
Reads aligned (%)
86.3
Duplicates removed (%)
2.7
Number of peaks
3806 (qval < 1E-05)

Base call quality data from DBCLS SRA