Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
zip-8

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
F23F12.9_GFP_Emb_ChIP_Rep1
strain
OP327(official name : OP327 genotype : unc327(ed3); wgIs102(F23F12.::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. made_by : Bob Waterston's lab from UW )
developmental stage
embryo
genotype
unc327(ed3);wgIs102(F23F12.::TY1 EGFP FLAG;unc119)
sex type
mixed Male and Hermaphrodite population

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

ce10

Number of total reads
2201448
Reads aligned (%)
19.7
Duplicates removed (%)
18.9
Number of peaks
773 (qval < 1E-05)

ce11

Number of total reads
2201448
Reads aligned (%)
19.7
Duplicates removed (%)
18.9
Number of peaks
773 (qval < 1E-05)

Base call quality data from DBCLS SRA