Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
lin-35

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
LIN-35_GFP_L1_ChIP_Rep2
strain
YL409(official name : YL409 genotype : unc-119(ed3) III; vrIs60 [pLIN-35::LIN-35:GFP:FLAG::DPL-1 3'-UTR genotype : unc-119 (+)]) outcross : 0 mutagen : None tags : GFP::3xFlag description : The LIN-35::GFP fusion protein is driven by its own lin-35 promoter. made_by : Michelle Kudron (Valerie Reinke's lab) )
developmental stage
fed L1
genotype
unc-119(ed3) III; vrIs60 [pLIN-35::LIN-35:GFP:FLAG::DPL-1 3'-UTR
Sex
hermaphrodite

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

ce11

Number of total reads
10792562
Reads aligned (%)
42.8
Duplicates removed (%)
34.4
Number of peaks
4547 (qval < 1E-05)

ce10

Number of total reads
10792562
Reads aligned (%)
42.7
Duplicates removed (%)
34.4
Number of peaks
4546 (qval < 1E-05)

Base call quality data from DBCLS SRA