Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
Decidua
MeSH Description
The hormone-responsive glandular layer of ENDOMETRIUM that sloughs off at each menstrual flow (decidua menstrualis) or at the termination of pregnancy. During pregnancy, the thickest part of the decidua forms the maternal portion of the PLACENTA, thus named decidua placentalis. The thin portion of the decidua covering the rest of the embryo is the decidua capsularis.

Attributes by original data submitter

Sample

source_name
artificially decidualized uterus, myometrium
strain
B6CBAF1/J
tissue/cell
purified myometrial stromal cells
embryonic day
E7.5
ChIP
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA complexes were immuoprecipitated from sonicated nuclei. Libraries were prepared using the Illumina TruSeq system and PCR amplification.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
29976488
Reads aligned (%)
95.8
Duplicates removed (%)
12.0
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
29976488
Reads aligned (%)
95.6
Duplicates removed (%)
12.0
Number of peaks
570 (qval < 1E-05)

Base call quality data from DBCLS SRA