Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
Pregnant uterus
NA
NA

Attributes by original data submitter

Sample

source_name
pregnant uterus, inter-implantation sites
strain
B6CBAF1/J
tissue/cell
whole tissue from inter-implantation sites
embryonic day
E7.5
ChIP
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA complexes were immuoprecipitated from sonicated nuclei. Libraries were prepared using the Illumina TruSeq system and PCR amplification.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
32364574
Reads aligned (%)
95.3
Duplicates removed (%)
12.6
Number of peaks
406 (qval < 1E-05)

mm9

Number of total reads
32364574
Reads aligned (%)
95.1
Duplicates removed (%)
12.6
Number of peaks
461 (qval < 1E-05)

Base call quality data from DBCLS SRA