Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Breast

Cell type

SUM 159PT

Primary Tissue

Breast

Tissue Diagnosis

Anaplastic Carcinoma

Sample

source_name

Breast cancer

cell line

SUM159

tissue

Breast cancer

age

Passage 8

genotype

Triple negative

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP was carried out using EZ-ChIP kit (EMD Millipore, #17-371) following the manufacturer's protocol. DNA libraries were prepared for sequencing using the Illumina TruSeq Sample preparation kit.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

71315489

Reads aligned (%)

20.0

Duplicates removed (%)

68.3

Number of peaks

410 (qval < 1E-05)

hg19

Number of total reads

71315489

Reads aligned (%)

19.8

Duplicates removed (%)

70.4

Number of peaks

342 (qval < 1E-05)